J3_9FBV_013

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9FBV|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9FBV_013 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1258

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9FBV|1|a|C|1306
9FBV|1|a|A|1307
9FBV|1|a|A|1308
9FBV|1|a|G|1309
*
9FBV|1|a|C|1605
9FBV|1|a|C|1606
9FBV|1|a|C|1607
9FBV|1|a|A|1608
9FBV|1|a|A|1609
9FBV|1|a|A|1610
9FBV|1|a|C|1611
*
9FBV|1|a|G|1620
9FBV|1|a|U|1621
9FBV|1|a|G|1622

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34