J3_9FDA_006
3D structure
- PDB id
- 9FDA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9FDA|1|B|U|871, 9FDA|1|B|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9FDA_006 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.0508
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9FDA|1|B|C|826
9FDA|1|B|U|827
9FDA|1|B|U|828
9FDA|1|B|G|829
*
9FDA|1|B|C|857
9FDA|1|B|G|858
9FDA|1|B|G|859
9FDA|1|B|A|860
9FDA|1|B|G|861
*
9FDA|1|B|C|868
9FDA|1|B|G|869
9FDA|1|B|U|870
9FDA|1|B|U|871
9FDA|1|B|A|872
9FDA|1|B|A|873
9FDA|1|B|G|874
Current chains
- Chain B
- 16S rRNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS8
- Chain U
- Small ribosomal subunit protein bS21
Coloring options: