J3_9G06_009
3D structure
- PDB id
- 9G06 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9G06|1|B|A|975, 9G06|1|B|G|976, 9G06|1|B|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G06_009 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0647
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9G06|1|B|U|955
9G06|1|B|U|956
9G06|1|B|U|957
9G06|1|B|A|958
9G06|1|B|A|959
9G06|1|B|U|960
9G06|1|B|U|961
9G06|1|B|C|962
*
9G06|1|B|G|973
9G06|1|B|A|974
9G06|1|B|A|975
9G06|1|B|G|976
9G06|1|B|A|977
9G06|1|B|A|978
9G06|1|B|C|979
9G06|1|B|C|980
9G06|1|B|U|981
9G06|1|B|U|982
9G06|1|B|A|983
9G06|1|B|C|984
*
9G06|1|B|G|1221
9G06|1|B|G|1222
9G06|1|B|C|1223
9G06|1|B|U|1224
9G06|1|B|A|1225
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14
- Chain S
- Small ribosomal subunit protein uS19
- Chain b
- Small ribosomal subunit protein uS9
- Chain c
- Small ribosomal subunit protein uS10
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