J3_9G1Z_005
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_005 not in the Motif Atlas
- Geometric match to J3_8CRE_005
- Geometric discrepancy: 0.0434
- The information below is about J3_8CRE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
9G1Z|1|1|A|369
9G1Z|1|1|U|370
9G1Z|1|1|G|371
9G1Z|1|1|A|372
9G1Z|1|1|A|373
9G1Z|1|1|A|374
9G1Z|1|1|A|375
9G1Z|1|1|G|376
*
9G1Z|1|1|C|403
9G1Z|1|1|G|404
*
9G1Z|1|4|C|19
9G1Z|1|4|U|20
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 9
- Ribosomal 60S subunit protein L26B
- Chain AM
- 60S ribosomal protein L39
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain x
- Ribosomal 60S subunit protein L17B
Coloring options: