J3_9G1Z_034
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_034 not in the Motif Atlas
- Homologous match to J3_8CRE_078
- Geometric discrepancy: 0.0798
- The information below is about J3_8CRE_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9G1Z|1|A|C|1146
9G1Z|1|A|C|1147
9G1Z|1|A|A|1148
9G1Z|1|A|G|1149
*
9G1Z|1|A|C|1568
9G1Z|1|A|U|1569
9G1Z|1|A|A|1570
9G1Z|1|A|G|1571
9G1Z|1|A|U|1572
9G1Z|1|A|A|1573
9G1Z|1|A|A|1574
*
9G1Z|1|A|U|1596
9G1Z|1|A|G|1597
9G1Z|1|A|A|1598
9G1Z|1|A|U|1599
9G1Z|1|A|U|1600
9G1Z|1|A|A|1601
9G1Z|1|A|C|1602
9G1Z|1|A|G|1603
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain G
- Ribosomal 40S subunit protein S5
- Chain R
- Ribosomal 40S subunit protein S16A
- Chain d
- Ribosomal 40S subunit protein S28B
Coloring options: