J3_9G6J_008
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UC*GAGGACUGCG*CUAGGA
- Length
- 18 nucleotides
- Bulged bases
- 9G6J|1|1|U|605
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G6J_008 not in the Motif Atlas
- Homologous match to J3_8CRE_008
- Geometric discrepancy: 0.0587
- The information below is about J3_8CRE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83726.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9G6J|1|1|U|497
9G6J|1|1|C|498
*
9G6J|1|1|G|586
9G6J|1|1|A|587
9G6J|1|1|G|588
9G6J|1|1|G|589
9G6J|1|1|A|590
9G6J|1|1|C|591
9G6J|1|1|U|592
9G6J|1|1|G|593
9G6J|1|1|C|594
9G6J|1|1|G|595
*
9G6J|1|1|C|604
9G6J|1|1|U|605
9G6J|1|1|A|606
9G6J|1|1|G|607
9G6J|1|1|G|608
9G6J|1|1|A|609
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AF
- Ribosomal 60S subunit protein L32
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain n
- 60S ribosomal protein L6
- Chain o
- Ribosomal 60S subunit protein L7A
Coloring options: