J3_9G6J_025
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 9G6J|1|3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G6J_025 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.0742
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9G6J|1|3|C|9
9G6J|1|3|C|10
9G6J|1|3|A|11
9G6J|1|3|U|12
9G6J|1|3|A|13
9G6J|1|3|U|14
*
9G6J|1|3|A|66
9G6J|1|3|G|67
*
9G6J|1|3|U|111
9G6J|1|3|G|112
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Ribosomal 60S subunit protein L21A
- Chain m
- Ribosomal 60S subunit protein L5
- Chain r
- Ribosomal 60S subunit protein L10
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