J3_9G6J_026
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 9G6J|1|4|U|60, 9G6J|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G6J_026 not in the Motif Atlas
- Homologous match to J3_8CRE_027
- Geometric discrepancy: 0.0569
- The information below is about J3_8CRE_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9G6J|1|4|A|44
9G6J|1|4|C|45
*
9G6J|1|4|G|58
9G6J|1|4|A|59
9G6J|1|4|U|60
9G6J|1|4|A|61
9G6J|1|4|C|62
9G6J|1|4|G|63
9G6J|1|4|U|64
*
9G6J|1|4|A|96
9G6J|1|4|A|97
9G6J|1|4|U|98
9G6J|1|4|C|99
9G6J|1|4|U|100
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 8
- Ribosomal 60S subunit protein L25
- Chain AI
- Ribosomal 60S subunit protein L35A
- Chain AK
- Ribosomal protein L37
- Chain AM
- 60S ribosomal protein L39
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