J3_9G6J_028
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 9G6J|1|A|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G6J_028 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.054
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9G6J|1|A|A|41
9G6J|1|A|G|42
9G6J|1|A|A|43
9G6J|1|A|U|44
9G6J|1|A|U|45
9G6J|1|A|A|46
9G6J|1|A|A|47
9G6J|1|A|G|48
*
9G6J|1|A|C|429
9G6J|1|A|G|430
9G6J|1|A|C|431
9G6J|1|A|G|432
9G6J|1|A|C|433
9G6J|1|A|A|434
9G6J|1|A|A|435
9G6J|1|A|A|436
9G6J|1|A|U|437
*
9G6J|1|A|A|462
9G6J|1|A|G|463
9G6J|1|A|U|464
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain K
- Ribosomal 40S subunit protein S9B
- Chain Y
- Ribosomal 40S subunit protein S23B
Coloring options: