J3_9G8M_004
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9G8M|1|L5|G|409, 9G8M|1|L5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G8M_004 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.311
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9G8M|1|L5|U|380
9G8M|1|L5|U|381
9G8M|1|L5|G|382
9G8M|1|L5|A|383
9G8M|1|L5|A|384
9G8M|1|L5|A|385
9G8M|1|L5|A|386
9G8M|1|L5|G|387
9G8M|1|L5|A|388
9G8M|1|L5|A|389
9G8M|1|L5|C|390
*
9G8M|1|L5|G|401
9G8M|1|L5|A|402
9G8M|1|L5|G|403
9G8M|1|L5|U|404
9G8M|1|L5|U|405
9G8M|1|L5|C|406
9G8M|1|L5|A|407
9G8M|1|L5|A|408
9G8M|1|L5|G|409
9G8M|1|L5|A|410
9G8M|1|L5|G|411
9G8M|1|L5|G|412
9G8M|1|L5|G|413
9G8M|1|L5|C|414
9G8M|1|L5|G|415
*
9G8M|1|L8|C|19
9G8M|1|L8|A|20
Current chains
- Chain L5
- 28S ribosomal RNA
- Chain L8
- 5.8S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- 60S ribosomal protein L39
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