J3_9G8M_011

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

9G8M|1|L5|U|2786, 9G8M|1|L5|A|2787, 9G8M|1|L5|U|2788

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G8M_011 not in the Motif Atlas

Homologous match to J3_8P9A_054

Geometric discrepancy: 0.152

The information below is about J3_8P9A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9G8M|1|L5|G|2400
9G8M|1|L5|A|2401
9G8M|1|L5|A|2402
9G8M|1|L5|G|2403
*
9G8M|1|L5|C|2783
9G8M|1|L5|C|2784
9G8M|1|L5|A|2785
9G8M|1|L5|U|2786
9G8M|1|L5|A|2787
9G8M|1|L5|U|2788
9G8M|1|L5|C|2789
*
9G8M|1|L5|G|2798
9G8M|1|L5|U|2799
9G8M|1|L5|C|2800

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39