J3_9G8M_016

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G8M_016 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1509

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

9G8M|1|L5|A|2596
9G8M|1|L5|G|2597
9G8M|1|L5|A|2598
9G8M|1|L5|A|2599
9G8M|1|L5|G|2600
*
9G8M|1|L5|C|2735
9G8M|1|L5|C|2736
*
9G8M|1|L5|G|2740
9G8M|1|L5|A|2741
9G8M|1|L5|A|2742
9G8M|1|L5|A|2743
9G8M|1|L5|A|2744
9G8M|1|L5|U|2745

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a