3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GFT_013 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.1298
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

9GFT|1|0|C|1063
9GFT|1|0|G|1064
9GFT|1|0|U|1065
9GFT|1|0|C|1066
9GFT|1|0|A|1067
9GFT|1|0|G|1068
*
9GFT|1|0|C|1107
9GFT|1|0|G|1108
9GFT|1|0|C|1109
9GFT|1|0|A|1110
9GFT|1|0|A|1111
9GFT|1|0|C|1112
9GFT|1|0|C|1113
*
9GFT|1|0|G|1187
9GFT|1|0|A|1188
9GFT|1|0|U|1189
9GFT|1|0|G|1190
9GFT|1|0|A|1191
9GFT|1|0|C|1192
9GFT|1|0|G|1193

Current chains

Chain 0
16S ribosomal RNA

Nearby chains

Chain 1
Small ribosomal subunit protein uS2
Chain 2
Small ribosomal subunit protein uS3
Chain 4
Small ribosomal subunit protein uS5
Chain 6
Small ribosomal subunit protein uS7
Chain 8
Small ribosomal subunit protein uS9
Chain 9
Small ribosomal subunit protein uS10
Chain G
Small ribosomal subunit protein uS14

Coloring options:


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