J3_9GFT_045

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9GFT|1|AV|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GFT_045 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1118

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9GFT|1|AV|C|2091
9GFT|1|AV|U|2092
9GFT|1|AV|G|2093
*
9GFT|1|AV|C|2196
9GFT|1|AV|U|2197
9GFT|1|AV|A|2198
9GFT|1|AV|A|2199
9GFT|1|AV|C|2200
*
9GFT|1|AV|G|2223
9GFT|1|AV|G|2224
9GFT|1|AV|A|2225
9GFT|1|AV|C|2226
9GFT|1|AV|A|2227
9GFT|1|AV|G|2228

Current chains

Chain AV

23S RNA

Nearby chains

Chain AX

Large ribosomal subunit protein uL2

Chain Ac

Large ribosomal subunit protein bL9

Chain As

Large ribosomal subunit protein bL28