J3_9GGR_017

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9GGR|1|0|U|1240, 9GGR|1|0|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GGR_017 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1378

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9GGR|1|0|C|1237
9GGR|1|0|A|1238
9GGR|1|0|A|1239
9GGR|1|0|U|1240
9GGR|1|0|G|1241
*
9GGR|1|0|C|1296
9GGR|1|0|G|1297
9GGR|1|0|U|1298
9GGR|1|0|A|1299
9GGR|1|0|G|1300
9GGR|1|0|U|1301
9GGR|1|0|C|1302
9GGR|1|0|C|1303
*
9GGR|1|0|G|1334
9GGR|1|0|U|1335
9GGR|1|0|C|1336
9GGR|1|0|G|1337

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain 6

Small ribosomal subunit protein uS7

Chain F

Small ribosomal subunit protein uS13