J3_9GGR_045
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GGR_045 not in the Motif Atlas
- Homologous match to J3_5J7L_069
- Geometric discrepancy: 0.1209
- The information below is about J3_5J7L_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9GGR|1|AV|G|1424
9GGR|1|AV|G|1425
9GGR|1|AV|G|1426
9GGR|1|AV|A|1427
9GGR|1|AV|C|1428
9GGR|1|AV|G|1429
*
9GGR|1|AV|C|1564
9GGR|1|AV|C|1565
*
9GGR|1|AV|G|1568
9GGR|1|AV|A|1569
9GGR|1|AV|A|1570
9GGR|1|AV|A|1571
9GGR|1|AV|A|1572
9GGR|1|AV|G|1573
9GGR|1|AV|C|1574
Current chains
- Chain AV
- 23S ribosomal RNA
Nearby chains
- Chain AX
- Large ribosomal subunit protein uL2
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