3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
9GHA|1|A|U|871, 9GHA|1|A|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHA_006 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0618
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

9GHA|1|A|C|826
9GHA|1|A|U|827
9GHA|1|A|U|828
9GHA|1|A|G|829
*
9GHA|1|A|C|857
9GHA|1|A|G|858
9GHA|1|A|G|859
9GHA|1|A|A|860
9GHA|1|A|G|861
*
9GHA|1|A|C|868
9GHA|1|A|G|869
9GHA|1|A|U|870
9GHA|1|A|U|871
9GHA|1|A|A|872
9GHA|1|A|A|873
9GHA|1|A|G|874

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain H
30S ribosomal protein S8
Chain U
30S ribosomal protein S21

Coloring options:


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