J3_9GHA_032

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CUA*UAG*CAUAAG

Length

12 nucleotides

Bulged bases

9GHA|1|a|U|2334, 9GHA|1|a|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHA_032 not in the Motif Atlas

Geometric match to J3_5J7L_045

Geometric discrepancy: 0.1092

The information below is about J3_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

9GHA|1|a|C|2295
9GHA|1|a|U|2296
9GHA|1|a|A|2297
*
9GHA|1|a|U|2321
9GHA|1|a|A|2322
9GHA|1|a|G|2323
*
9GHA|1|a|C|2332
9GHA|1|a|A|2333
9GHA|1|a|U|2334
9GHA|1|a|A|2335
9GHA|1|a|A|2336
9GHA|1|a|G|2337

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L5

Chain n

50S ribosomal protein L18

Chain v

50S ribosomal protein L27