J3_9GHB_026

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9GHB|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHB_026 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0464

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GHB|1|a|C|1298
9GHB|1|a|G|1299
9GHB|1|a|G|1300
9GHB|1|a|A|1301
9GHB|1|a|A|1302
9GHB|1|a|G|1303
*
9GHB|1|a|C|1625
9GHB|1|a|A|1626
9GHB|1|a|G|1627
*
9GHB|1|a|C|1639
9GHB|1|a|A|1640
9GHB|1|a|A|1641
9GHB|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains