J3_9GHC_029

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHC_029 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0561

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9GHC|1|a|G|1424
9GHC|1|a|G|1425
9GHC|1|a|G|1426
9GHC|1|a|A|1427
9GHC|1|a|C|1428
9GHC|1|a|G|1429
*
9GHC|1|a|C|1564
9GHC|1|a|C|1565
*
9GHC|1|a|G|1568
9GHC|1|a|A|1569
9GHC|1|a|A|1570
9GHC|1|a|A|1571
9GHC|1|a|A|1572
9GHC|1|a|G|1573
9GHC|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2