J3_9GHE_026

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9GHE|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHE_026 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0477

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GHE|1|a|C|1298
9GHE|1|a|G|1299
9GHE|1|a|G|1300
9GHE|1|a|A|1301
9GHE|1|a|A|1302
9GHE|1|a|G|1303
*
9GHE|1|a|C|1625
9GHE|1|a|A|1626
9GHE|1|a|G|1627
*
9GHE|1|a|C|1639
9GHE|1|a|A|1640
9GHE|1|a|A|1641
9GHE|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains