3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
9GHF|1|A|U|871, 9GHF|1|A|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHF_006 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.057
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

9GHF|1|A|C|826
9GHF|1|A|U|827
9GHF|1|A|U|828
9GHF|1|A|G|829
*
9GHF|1|A|C|857
9GHF|1|A|G|858
9GHF|1|A|G|859
9GHF|1|A|A|860
9GHF|1|A|G|861
*
9GHF|1|A|C|868
9GHF|1|A|G|869
9GHF|1|A|U|870
9GHF|1|A|U|871
9GHF|1|A|A|872
9GHF|1|A|A|873
9GHF|1|A|G|874

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain H
30S ribosomal protein S8
Chain U
30S ribosomal protein S21

Coloring options:


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