J3_9GHG_005

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

9GHG|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHG_005 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.1562

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9GHG|1|A|C|272
9GHG|1|A|A|273
9GHG|1|A|A|274
9GHG|1|A|A|275
9GHG|1|A|C|276
*
9GHG|1|A|G|295
9GHG|1|A|G|296
9GHG|1|A|G|297
9GHG|1|A|U|298
9GHG|1|A|U|299
9GHG|1|A|G|300
9GHG|1|A|U|301
9GHG|1|A|A|302
*
9GHG|1|A|U|415
9GHG|1|A|G|416

Current chains

Chain A

23S rRNA

Nearby chains