J3_9GHG_012

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

9GHG|1|A|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHG_012 not in the Motif Atlas

Homologous match to J3_4WF9_016

Geometric discrepancy: 0.1278

The information below is about J3_4WF9_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

9GHG|1|A|U|1381
9GHG|1|A|C|1382
9GHG|1|A|G|1383
9GHG|1|A|G|1384
9GHG|1|A|G|1385
9GHG|1|A|U|1386
9GHG|1|A|C|1387
*
9GHG|1|A|G|1418
9GHG|1|A|A|1419
9GHG|1|A|U|1420
9GHG|1|A|A|1421
9GHG|1|A|A|1422
*
9GHG|1|A|U|1439
9GHG|1|A|A|1440

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23