J3_9GHG_026
3D structure
- PDB id
- 9GHG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- CUAA*UGCAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9GHG|1|a|U|880, 9GHG|1|a|A|882
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GHG_026 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.1333
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9GHG|1|a|C|834
9GHG|1|a|U|835
9GHG|1|a|A|836
9GHG|1|a|A|837
*
9GHG|1|a|U|866
9GHG|1|a|G|867
9GHG|1|a|C|868
9GHG|1|a|A|869
9GHG|1|a|G|870
*
9GHG|1|a|C|877
9GHG|1|a|A|878
9GHG|1|a|U|879
9GHG|1|a|U|880
9GHG|1|a|A|881
9GHG|1|a|A|882
9GHG|1|a|G|883
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S2
- Chain i
- 30S ribosomal protein S8
Coloring options: