J3_9GHG_036
3D structure
- PDB id
- 9GHG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 9GHG|1|a|U|1250, 9GHG|1|a|U|1312
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GHG_036 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1765
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
9GHG|1|a|C|1247
9GHG|1|a|A|1248
9GHG|1|a|A|1249
9GHG|1|a|U|1250
9GHG|1|a|G|1251
*
9GHG|1|a|C|1306
9GHG|1|a|U|1307
9GHG|1|a|C|1308
9GHG|1|a|A|1309
9GHG|1|a|G|1310
9GHG|1|a|U|1311
9GHG|1|a|U|1312
9GHG|1|a|C|1313
*
9GHG|1|a|G|1344
9GHG|1|a|C|1345
9GHG|1|a|U|1346
9GHG|1|a|G|1347
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain h
- 30S ribosomal protein S7
- Chain n
- 30S ribosomal protein S13
Coloring options: