J3_9GHH_007

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9GHH|1|A|U|731, 9GHH|1|A|G|837, 9GHH|1|A|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHH_007 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.0882

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9GHH|1|A|U|728
9GHH|1|A|G|729
9GHH|1|A|A|730
9GHH|1|A|U|731
9GHH|1|A|C|732
9GHH|1|A|U|733
9GHH|1|A|A|734
*
9GHH|1|A|U|818
9GHH|1|A|A|819
9GHH|1|A|G|820
*
9GHH|1|A|C|836
9GHH|1|A|G|837
9GHH|1|A|A|838
9GHH|1|A|A|839

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2