J3_9GHH_011

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

9GHH|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHH_011 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.0774

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

9GHH|1|A|C|1342
9GHH|1|A|U|1343
9GHH|1|A|A|1344
9GHH|1|A|A|1345
9GHH|1|A|G|1346
*
9GHH|1|A|C|1649
9GHH|1|A|G|1650
9GHH|1|A|C|1651
9GHH|1|A|A|1652
9GHH|1|A|A|1653
9GHH|1|A|A|1654
9GHH|1|A|C|1655
*
9GHH|1|A|G|1664
9GHH|1|A|U|1665
9GHH|1|A|A|1666
9GHH|1|A|G|1667

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34