J3_9GHH_013

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHH_013 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0701

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9GHH|1|A|G|1468
9GHH|1|A|G|1469
9GHH|1|A|G|1470
9GHH|1|A|A|1471
9GHH|1|A|C|1472
9GHH|1|A|G|1473
*
9GHH|1|A|C|1611
9GHH|1|A|C|1612
*
9GHH|1|A|G|1615
9GHH|1|A|A|1616
9GHH|1|A|A|1617
9GHH|1|A|A|1618
9GHH|1|A|A|1619
9GHH|1|A|G|1620
9GHH|1|A|C|1621

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2