J3_9GHH_028
3D structure
- PDB id
- 9GHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GHH_028 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0859
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9GHH|1|a|U|952
9GHH|1|a|G|953
9GHH|1|a|G|954
9GHH|1|a|A|955
*
9GHH|1|a|U|1245
9GHH|1|a|A|1246
9GHH|1|a|C|1247
*
9GHH|1|a|G|1347
9GHH|1|a|G|1348
9GHH|1|a|A|1349
9GHH|1|a|A|1350
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain D
- Transfer RNA; tRNA
- Chain F
- Transfer RNA; tRNA
- Chain j
- 30S ribosomal protein S9
- Chain n
- 30S ribosomal protein S13
Coloring options: