J3_9GMO_001

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9GMO|1|A|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GMO|1|A|C|112
9GMO|1|A|A|113
9GMO|1|A|G|114
9GMO|1|A|C|115
9GMO|1|A|G|116
*
9GMO|1|A|C|155
9GMO|1|A|G|156
9GMO|1|A|U|157
9GMO|1|A|A|158
9GMO|1|A|C|159
9GMO|1|A|G|160
*
9GMO|1|A|C|275
9GMO|1|A|C|276
9GMO|1|A|G|277
9GMO|1|A|G|278

Current chains

Chain A

28S rRNA

Nearby chains

Chain b

60S ribosomal protein L35

Chain c

60S ribosomal protein L36

Chain l

60S ribosomal protein L15

Chain n

60S ribosomal protein L7a

Chain r

60S ribosomal protein L13