J3_9GMO_005
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9GMO|1|A|G|409, 9GMO|1|A|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GMO_005 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.3286
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9GMO|1|A|U|380
9GMO|1|A|U|381
9GMO|1|A|G|382
9GMO|1|A|A|383
9GMO|1|A|A|384
9GMO|1|A|A|385
9GMO|1|A|A|386
9GMO|1|A|G|387
9GMO|1|A|A|388
9GMO|1|A|A|389
9GMO|1|A|C|390
*
9GMO|1|A|G|401
9GMO|1|A|A|402
9GMO|1|A|G|403
9GMO|1|A|U|404
9GMO|1|A|U|405
9GMO|1|A|C|406
9GMO|1|A|A|407
9GMO|1|A|A|408
9GMO|1|A|G|409
9GMO|1|A|A|410
9GMO|1|A|G|411
9GMO|1|A|G|412
9GMO|1|A|G|413
9GMO|1|A|C|414
9GMO|1|A|G|415
*
9GMO|1|C|C|19
9GMO|1|C|A|20
Current chains
- Chain A
- 28S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain 0
- Cytoplasmic 60S subunit biogenesis factor ZNF622
- Chain F
- 60S ribosomal protein L4
- Chain J
- 60S ribosomal protein L17
- Chain S
- Large ribosomal subunit protein uL24
- Chain f
- 60S ribosomal protein L39
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