J3_9GMO_007
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9GMO|1|A|A2M|1534, 9GMO|1|A|G|1641, 9GMO|1|A|A|1642
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GMO_007 not in the Motif Atlas
- Homologous match to J3_8P9A_049
- Geometric discrepancy: 0.0741
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9GMO|1|A|U|1531
9GMO|1|A|G|1532
9GMO|1|A|A|1533
9GMO|1|A|A2M|1534
9GMO|1|A|C|1535
9GMO|1|A|PSU|1536
9GMO|1|A|A|1537
*
9GMO|1|A|U|1622
9GMO|1|A|A|1623
9GMO|1|A|G|1624
*
9GMO|1|A|C|1640
9GMO|1|A|G|1641
9GMO|1|A|A|1642
9GMO|1|A|A|1643
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain 0
- Cytoplasmic 60S subunit biogenesis factor ZNF622
- Chain D
- 60S ribosomal protein L8
- Chain d
- 60S ribosomal protein L37
- Chain f
- 60S ribosomal protein L39
- Chain l
- 60S ribosomal protein L15
Coloring options: