J3_9GMO_017
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 9GMO|1|A|G|4076
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GMO_017 not in the Motif Atlas
- Geometric match to J3_5J7L_044
- Geometric discrepancy: 0.1301
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
9GMO|1|A|C|3937
9GMO|1|A|G|3938
9GMO|1|A|G|3939
*
9GMO|1|A|C|4074
9GMO|1|A|U|4075
9GMO|1|A|G|4076
9GMO|1|A|A|4077
9GMO|1|A|C|4078
*
9GMO|1|A|G|4168
9GMO|1|A|G|4169
9GMO|1|A|A|4170
9GMO|1|A|C|4171
9GMO|1|A|A|4172
9GMO|1|A|G|4173
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L8
- Chain l
- 60S ribosomal protein L15
- Chain n
- 60S ribosomal protein L7a
Coloring options: