J3_9GR1_025

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9GR1|1|a|A|1304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GR1_025 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0538

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GR1|1|a|C|1300
9GR1|1|a|G|1301
9GR1|1|a|G|1302
9GR1|1|a|A|1303
9GR1|1|a|A|1304
9GR1|1|a|G|1305
*
9GR1|1|a|C|1627
9GR1|1|a|A|1628
9GR1|1|a|G|1629
*
9GR1|1|a|C|1641
9GR1|1|a|A|1642
9GR1|1|a|A|1643
9GR1|1|a|G|1644

Current chains

Chain a

23S ribosomal RNA

Nearby chains