J3_9GUS_017

3D structure

PDB id

9GUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex TEC resolved (30S only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9GUS|1|A|U|1240, 9GUS|1|A|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GUS_017 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1382

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9GUS|1|A|C|1237
9GUS|1|A|A|1238
9GUS|1|A|A|1239
9GUS|1|A|U|1240
9GUS|1|A|G|1241
*
9GUS|1|A|C|1296
9GUS|1|A|G|1297
9GUS|1|A|U|1298
9GUS|1|A|A|1299
9GUS|1|A|G|1300
9GUS|1|A|U|1301
9GUS|1|A|C|1302
9GUS|1|A|C|1303
*
9GUS|1|A|G|1334
9GUS|1|A|U|1335
9GUS|1|A|C|1336
9GUS|1|A|G|1337

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain N

30S ribosomal protein S13