3D structure

PDB id
9GUT (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S mRNA delivery complex (bS1 resolved)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
9GUT|1|A|U|871, 9GUT|1|A|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GUT_006 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0567
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

9GUT|1|A|C|826
9GUT|1|A|U|827
9GUT|1|A|U|828
9GUT|1|A|G|829
*
9GUT|1|A|C|857
9GUT|1|A|G|858
9GUT|1|A|G|859
9GUT|1|A|A|860
9GUT|1|A|G|861
*
9GUT|1|A|C|868
9GUT|1|A|G|869
9GUT|1|A|U|870
9GUT|1|A|U|871
9GUT|1|A|A|872
9GUT|1|A|A|873
9GUT|1|A|G|874

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain C
30S ribosomal protein S2
Chain I
30S ribosomal protein S8
Chain V
30S ribosomal protein S21

Coloring options:


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