J3_9GXX_002
3D structure
- PDB id
- 9GXX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.61 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 9GXX|1|A|C|48, 9GXX|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GXX_002 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0664
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9GXX|1|A|G|46
9GXX|1|A|C|47
9GXX|1|A|C|48
9GXX|1|A|U|49
9GXX|1|A|A|50
9GXX|1|A|A|51
9GXX|1|A|C|52
*
9GXX|1|A|G|359
9GXX|1|A|G|360
9GXX|1|A|G|361
9GXX|1|A|G|362
9GXX|1|A|A|363
9GXX|1|A|A|364
9GXX|1|A|U|365
9GXX|1|A|A|366
9GXX|1|A|U|367
*
9GXX|1|A|A|393
9GXX|1|A|G|394
9GXX|1|A|C|395
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain P
- Small ribosomal subunit protein bS16
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