J3_9GXX_008
3D structure
- PDB id
- 9GXX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.61 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GXX_008 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0698
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9GXX|1|A|U|943
9GXX|1|A|G|944
9GXX|1|A|G|945
9GXX|1|A|A|946
*
9GXX|1|A|U|1235
9GXX|1|A|A|1236
9GXX|1|A|C|1237
*
9GXX|1|A|G|1337
9GXX|1|A|G|1338
9GXX|1|A|A|1339
9GXX|1|A|A|1340
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS9
- Chain M
- Small ribosomal subunit protein uS13
- Chain V
- Transfer RNA; tRNA
- Chain Z
- Transfer RNA; tRNA
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