J3_9GXX_025

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9GXX|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GXX_025 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0625

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GXX|1|a|C|1298
9GXX|1|a|G|1299
9GXX|1|a|G|1300
9GXX|1|a|A|1301
9GXX|1|a|A|1302
9GXX|1|a|G|1303
*
9GXX|1|a|C|1625
9GXX|1|a|A|1626
9GXX|1|a|G|1627
*
9GXX|1|a|C|1639
9GXX|1|a|A|1640
9GXX|1|a|A|1641
9GXX|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains