J3_9GXX_026

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9GXX|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GXX_026 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1197

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9GXX|1|a|C|1306
9GXX|1|a|A|1307
9GXX|1|a|A|1308
9GXX|1|a|G|1309
*
9GXX|1|a|C|1605
9GXX|1|a|C|1606
9GXX|1|a|C|1607
9GXX|1|a|A|1608
9GXX|1|a|A|1609
9GXX|1|a|A|1610
9GXX|1|a|C|1611
*
9GXX|1|a|G|1620
9GXX|1|a|U|1621
9GXX|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34