J3_9GY4_008
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9GY4|1|5|A|1534, 9GY4|1|5|G|1641, 9GY4|1|5|A|1642
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GY4_008 not in the Motif Atlas
- Homologous match to J3_8P9A_049
- Geometric discrepancy: 0.07
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9GY4|1|5|U|1531
9GY4|1|5|G|1532
9GY4|1|5|A|1533
9GY4|1|5|A|1534
9GY4|1|5|C|1535
9GY4|1|5|U|1536
9GY4|1|5|A|1537
*
9GY4|1|5|U|1622
9GY4|1|5|A|1623
9GY4|1|5|G|1624
*
9GY4|1|5|C|1640
9GY4|1|5|G|1641
9GY4|1|5|A|1642
9GY4|1|5|A|1643
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
- Chain a
- 60S ribosomal protein L8
Coloring options: