J3_9H3K_002

3D structure

PDB id

9H3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor d126_(L29)-/(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9H3K|1|A|U|34, 9H3K|1|A|U|448, 9H3K|1|A|C|456

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3K_002 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1466

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

9H3K|1|A|C|32
9H3K|1|A|C|33
9H3K|1|A|U|34
9H3K|1|A|G|35
*
9H3K|1|A|C|445
9H3K|1|A|G|446
9H3K|1|A|A|447
9H3K|1|A|U|448
9H3K|1|A|A|449
9H3K|1|A|G|450
9H3K|1|A|U|451
9H3K|1|A|G|452
9H3K|1|A|A|453
9H3K|1|A|A|454
9H3K|1|A|C|455
9H3K|1|A|C|456
9H3K|1|A|A|457
9H3K|1|A|G|458
9H3K|1|A|U|459
9H3K|1|A|A|460
9H3K|1|A|C|461
*
9H3K|1|A|G|468
9H3K|1|A|G|469
9H3K|1|A|A|470
9H3K|1|A|A|471
9H3K|1|A|A|472
9H3K|1|A|G|473

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain Q

Large ribosomal subunit protein bL20