J3_9H3L_002

3D structure

PDB id

9H3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L29)-/(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

5.84 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9H3L|1|A|U|34, 9H3L|1|A|U|448, 9H3L|1|A|C|456

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3L_002 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1516

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

9H3L|1|A|C|32
9H3L|1|A|C|33
9H3L|1|A|U|34
9H3L|1|A|G|35
*
9H3L|1|A|C|445
9H3L|1|A|G|446
9H3L|1|A|A|447
9H3L|1|A|U|448
9H3L|1|A|A|449
9H3L|1|A|G|450
9H3L|1|A|U|451
9H3L|1|A|G|452
9H3L|1|A|A|453
9H3L|1|A|A|454
9H3L|1|A|C|455
9H3L|1|A|C|456
9H3L|1|A|A|457
9H3L|1|A|G|458
9H3L|1|A|U|459
9H3L|1|A|A|460
9H3L|1|A|C|461
*
9H3L|1|A|G|468
9H3L|1|A|G|469
9H3L|1|A|A|470
9H3L|1|A|A|471
9H3L|1|A|A|472
9H3L|1|A|G|473

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain Q

Large ribosomal subunit protein bL20