J3_9H3Q_010

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3Q_010 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.1992

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9H3Q|1|A|G|1424
9H3Q|1|A|G|1425
9H3Q|1|A|G|1426
9H3Q|1|A|A|1427
9H3Q|1|A|C|1428
9H3Q|1|A|G|1429
*
9H3Q|1|A|C|1564
9H3Q|1|A|C|1565
*
9H3Q|1|A|G|1568
9H3Q|1|A|A|1569
9H3Q|1|A|A|1570
9H3Q|1|A|A|1571
9H3Q|1|A|A|1572
9H3Q|1|A|G|1573
9H3Q|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains