J3_9H3Q_011

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3Q_011 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1448

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9H3Q|1|A|C|2091
9H3Q|1|A|U|2092
9H3Q|1|A|G|2093
*
9H3Q|1|A|C|2196
9H3Q|1|A|U|2197
9H3Q|1|A|A|2198
9H3Q|1|A|A|2199
9H3Q|1|A|C|2200
*
9H3Q|1|A|G|2223
9H3Q|1|A|G|2224
9H3Q|1|A|A|2225
9H3Q|1|A|C|2226
9H3Q|1|A|A|2227
9H3Q|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

UPF0307 protein YjgA

Chain H

Large ribosomal subunit protein bL9

Chain X

Large ribosomal subunit protein bL28