J3_9H3Q_016

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9H3Q|1|A|U|2833, 9H3Q|1|A|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3Q_016 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.1908

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9H3Q|1|A|G|2812
9H3Q|1|A|A|2813
9H3Q|1|A|A|2814
9H3Q|1|A|C|2815
*
9H3Q|1|A|G|2831
9H3Q|1|A|U|2832
9H3Q|1|A|U|2833
9H3Q|1|A|G|2834
9H3Q|1|A|A|2835
9H3Q|1|A|U|2836
*
9H3Q|1|A|A|2882
9H3Q|1|A|A|2883
9H3Q|1|A|U|2884
9H3Q|1|A|G|2885
9H3Q|1|A|A|2886
9H3Q|1|A|A|2887
9H3Q|1|A|C|2888

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17