J3_9H3S_010

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3S_010 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1163

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9H3S|1|A|G|1424
9H3S|1|A|G|1425
9H3S|1|A|G|1426
9H3S|1|A|A|1427
9H3S|1|A|C|1428
9H3S|1|A|G|1429
*
9H3S|1|A|C|1564
9H3S|1|A|C|1565
*
9H3S|1|A|G|1568
9H3S|1|A|A|1569
9H3S|1|A|A|1570
9H3S|1|A|A|1571
9H3S|1|A|A|1572
9H3S|1|A|G|1573
9H3S|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains