J3_9H6Y_007

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9H6Y|1|2|G|987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|A|934
9H6Y|1|2|U|935
9H6Y|1|2|U|936
9H6Y|1|2|C|937
*
9H6Y|1|2|G|981
9H6Y|1|2|G|982
9H6Y|1|2|A|983
9H6Y|1|2|C|984
9H6Y|1|2|C|985
9H6Y|1|2|A|986
9H6Y|1|2|G|987
9H6Y|1|2|A|988
9H6Y|1|2|G|989
*
9H6Y|1|2|C|996
9H6Y|1|2|A|997
9H6Y|1|2|U|998
9H6Y|1|2|U|999
9H6Y|1|2|U|1000

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein eS1

Chain P

Small ribosomal subunit protein uS15

Chain Q

Small ribosomal subunit protein uS11

Chain b

Small ribosomal subunit protein eS26