J3_9H6Y_009

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|C|1214
9H6Y|1|2|C|1215
9H6Y|1|2|A|1216
9H6Y|1|2|G|1217
*
9H6Y|1|2|C|1640
9H6Y|1|2|C|1641
9H6Y|1|2|A|1642
9H6Y|1|2|G|1643
9H6Y|1|2|U|1644
9H6Y|1|2|A|1645
9H6Y|1|2|A|1646
*
9H6Y|1|2|U|1668
9H6Y|1|2|G|1669
9H6Y|1|2|A|1670
9H6Y|1|2|U|1671
9H6Y|1|2|U|1672
9H6Y|1|2|A|1673
9H6Y|1|2|A|1674
9H6Y|1|2|G|1675

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Eukaryotic translation initiation factor 2 subunit 1

Chain H

Small ribosomal subunit protein uS7

Chain S

Small ribosomal subunit protein uS9

Chain d

Small ribosomal subunit protein eS28